tsRFun

Main Options

Paste sequences

Paste small RNA sequences in FASTQ format or FASTA format into the text area below.
Note: For FASTA data, the identical reads must be collapsed together. The header format is >A_B_xC, A indicate the name of the sample, B is the id of the sequence, C is the total count of the sequence.

Example-result

Or upload your FASTA file

Note: High volume files in FASTA format (200 MB file size limit for our server). For time-saving, we recommend the users to upload compressed file in Zip, tar.gz or RAR format.

Example Files: zip tar.gz rar fasta

Advanced Options

Number of Allowed mismatch:

Allow Indel:

Shortest tsRNA Length (nt):

Largest tsRNA Length (nt):

Selected P-Value:

Enter the cut-off of Alignment Score:

tsRFinder: Find tsRNAs from small RNA deep-sequencing data