袁乾沐

Y Song#, Q Yuan#, S Chen, Y Zeng, H Zhao, Yuedong Yang*. Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures. Nature Comm 2024 (In Press).

Q Yuan; C Tian; Y Song; P Ou; M Zhu; H Zhao*; Yuedong Yang*. GPSFun: geometry-aware protein sequence function predictions with language models. Nucleic Acids Res 2024.

Q Yuan, C Tian, Yuedong Yang*. Genome-scale annotation of protein binding sites via language model and geometric deep learning. Elife 2024. （中科院一区）

宋益东,袁乾沐,杨跃东. 深度学习在蛋白质功能预测中的应用. 合成生物学, DOI:10.12211/2096-8280.2022-078.

Y Fang, Y Jiang, L Wei, Q Ma, Z Ren, Q Yuan* , DQ Wei*. DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model.Bioinformatics 2023; 39 (12), btad718.

Q Yuan, JJ Xie, JC Xie, H Zhao, Yuedong Yang*. Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion. Brief Bioinfo 2023;bbad117.

Yuan Q, S Chen, Y Wang, H Zhao, Yuedong Yang*. Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning. Brief in Bioinfo 2022; bbac444.

Yuan Q, Chen S, Rao J, Zheng S, Zhao H, Yuedong Yang*. AlphaFold2-aware protein-DNA binding site prediction using graph transformer. Brief in Bioinfo 2022; bbab564 .

Yuan Q, Chen J, Zhao H, Zhou Y*, Yuedong Yang*. Structure-aware protein-protein interaction site prediction using deep graph convolutional network. Bioinformatics 2021; btab643.