Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque

Gene expression based inference of cancer drug sensitivity

Connecting omics signatures and revealing biological mechanisms with iLINCS

Computational pharmacogenomic screen identifies drugs that potentiate the anti-breast cancer activity of statins

SpotClean adjusts for spot swapping in spatial transcriptomics data

ORIGINS: a protein network-based approach to quantify cell pluripotency from scRNA-seq data. Daniela Senra, Nara Guisoni, and Luis Diambra. bioRxiv posted 10 May 2022 doi:10.1101/2022.05.09.491232

Stardust: improving spatial transcriptomics data analysis through space aware modularity optimization based clustering. Simone Avesani, Eva Viesi, Luca Alessandr&igrave, Giovanni Motterle, Vincenzo Bonnici, Marco Beccuti, Raffaele Calogero, and Rosalba Giugno. bioRxiv posted 10 May 2022 doi:10.1101/2022.04.27.489655

Explainable multiview framework for dissecting spatial relationships from highly multiplexed data Jovan Tanevski, Ricardo Omar Ramirez Flores, Attila Gabor, Denis Schapiro & Julio Saez-Rodriguez 德国

Systematic evaluation of colorectal cancer organoid system by single-cell RNA-Seq analysis Rui Wang, Yunuo Mao, Wendong Wang, Xin Zhou, Wei Wang, Shuai Gao, Jingyun Li, Lu Wen, Wei Fu & Fuchou Tang