郑双佳

Zheng S, Tan Y, Wang Z, Li C, Zhang Z, Sang X, Chen H, Yuedong Yang*. Accelerated rational PROTAC design via deep learning and molecular simulations. Natue Machine Intelligence 2022;4:739–748 PDF.

Zheng S#, Y Li#, S Chen, J Xu* and Yuedong Yang*. Predicting Drug Protein Interaction using Quasi-Visual Question Answering System. Nature Machine Intelligence 2020;2(1):134-140 .

Zheng S, T Zeng, C Li, B Chen, CW Coley, Yuedong Yang*, Ruibo Wu*. BioNavi-NP: Biosynthesis Navigator for Natural Products. Nat Comm 2022;13:3342.

Zheng S, S Mai, Y Sun, H Hu*, Yuedong Yang*. Subgraph-aware Few-Shot Inductive Link Prediction via Meta-Learning. IEEE TKDE 2022; DOI: 10.1109/TKDE.2022.3177212 .

Rao J, Zheng S, Mai S, Yuedong Yang*.Communicative Subgraph Representation Learning for Multi-Relational Inductive Drug-Gene Interaction Prediction. IJCAI 2022 (accepted).

Wang P, Zheng S, Jiang Y, Li C, Liu J, Wen C, Atanas P, Qian D*, Chen H*, Yuedong Yang*. Structure-aware multi-modal deep learning for drug-protein interactions prediction. J Chem Inf Model 2022; 62(5):1308–1317.

Yuan Q, Chen S, Rao J, Zheng S, Zhao H, Yuedong Yang*. AlphaFold2-aware protein-DNA binding site prediction using graph transformer. Brief in Bioinfo 2022; bbab564 .

Song Y, Zheng S, Li L, Zhang X, Zhang X, Huang Z, Chen J, Zhao H, Jie Y, Wang R, Chong Y*, Shen J*, Zha Y*, Yuedong Yang*. Deep learning Enables Accurate Diagnosis of Novel Coronavirus (COVID-19) with CT images. IEEE TCBB 2021;18(6):2775-2780.

Chen J, Zheng S, Zhao H, Yuedong Yang*. Structure-aware Protein Solubility Prediction From Sequence Through Graph Convolutional Network And Predicted Contact Map. J Cheminfo 2021; 13(1):7.

Chen J#, Zheng S#, Yuedong Yang*. Learning Attributed Graph Representation with Communicative Message Passing Transformer. IJCAI 2021 arxiv (AI Top conference, CCF-A, Acceptance rate=13.9%) .

Mai #, Zheng S#, Yuedong Yang*, Hu H*. Communicative Message Passing for Inductive Relation Reasoning. AAAI 2021(AI Top conference, CCF-A, acceptance=21%) https://arxiv.org/abs/2012.08911>arxiv 2012.08911.

Zheng S#, Rao J#, Song Y, Zhang J, Xiao X, Fang EF, Yuedong Yang*, Niu Z*. PharmKG: A Dedicated Knowledge Graph Benchmark for Biomedical Data Mining. Brief in Bioinfo 2020 (IF=9.0); doi:10.1093/bib/bbaa344.

Zheng S, Rao J, Zhang Z, Xu J*, Yuedong Yang*. Predicting Retrosynthetic Reactions Using Self-Corrected Transformer Neural Networks. J Chem Inf Model. 2020 Jan 27;60(1):47-55. doi: 10.1021/acs.jcim.9b00949 （Cited: >100).