饶家华

J Rao, J Xie, Q Yuan, D Liu, Z Wang, Y Lu*, S Zheng*, Yuedong Yang*. A Variational Expectation-Maximization Framework for Balanced Multi-scale Learning of Protein and Drug Interactions. Nature Comm 2024;15:4476.

J Rao, Z Shan, L Liu, Y Zhou, Yuedong Yang*. Retrieval-based Knowledge Augmented Vision Language Pre-training. ACM MM 2023 (CCF-A conference).

Rao J, Zheng S, Yuedong Yang*. Quantitative Evaluation of Explainable Graph Neural Networks for Molecular Property Prediction. Patterns 2022;100628. (Cell子刊)

Rao J, Zheng S, Mai S, Yuedong Yang*.Communicative Subgraph Representation Learning for Multi-Relational Inductive Drug-Gene Interaction Prediction. IJCAI 2022.（CCF-A; AI top conference)

Rao J, Zhou X, Lu Y, Zhao H, Yuedong Yang*. Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks. iScience 2021; 24(5):102393. (细胞出版社中国年度论文奖)

Zheng S#, Rao J#, Song Y, Zhang J, Xiao X, Fang EF, Yuedong Yang*, Niu Z*. PharmKG: A Dedicated Knowledge Graph Benchmark for Biomedical Data Mining. Brief in Bioinfo 2020 (IF=9.0); doi:10.1093/bib/bbaa344.

Zheng S#, Rao J#, Zhang Z, Xu J*, Yuedong Yang*. Predicting Retrosynthetic Reactions Using Self-Corrected Transformer Neural Networks. J Chem Inf Model. 2020 Jan 27;60(1):47-55. doi: 10.1021/acs.jcim.9b00949.

Wang X, Zhou X, Rao J, Zhang Z, and Yuedong Yang. Imputing DNA Methylation by Transferred Learning Based Neural Network. J Comput Sci Tech 2022; 37(2):320.

Yuan Q, Chen S, Rao J, Zheng S, Zhao H, Yuedong Yang*. AlphaFold2-aware protein-DNA binding site prediction using graph transformer. Brief in Bioinfo 2022; bbab564 .

Chai H, Zhou X, Zhang Z, Rao J, Zhao H, Yuedong Yang*. Integrating multi-omics data with deep learning for predicting cancer prognosis. Comput Biol Med 2021; 134:104481.

Zeng Y, Zhou X, Rao J, Lu Y*, Yuedong Yang*. Accurately Clustering Single-cell RNA-seq data by Capturing Structural Relations between Cells through Graph Convolutional Network. BIBM 2020;519-522 bioRxiv 2020.09.02.278804 .

Zheng S, Zhang J, Rao J, Xiao X, Menpes-Smith W, JY Chen, Yuedong Yang* and Z Niu*. Biomedical Knowledge Graph of COVID-19: Construction and Applications. SIGKDD 2020 (BioKDD workshop).

Ke Y, Rao J, Zhao H, Lu Y, Xiao N*, Yuedong Yang*. Accurate Prediction of Genome-wide RNA Secondary Structure Profile Based on Extreme Gradient Boosting. Bioinformatics. 2020 May 28: 36(17):4576-82. doi: 10.1093/bioinformatics/btaa534.